< Back to small molecule database

BDBM519281

E3L022139
Internal ID: BDB022139
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB022139/BDB022139.sdf
Basic Properties
Compound ID
E3L022139
Internal ID
BDB022139
Molecular formula
C23H28N6OS
Molecular weight
436.585000
Exact mass
436.204531
XLogP
3.7428
TPSA
67.1500
HBA / HBD
6 / 0
Rotatable bonds
5
Heavy atoms / rings
31 / 5
Activity summary
IC50 > 67568.00000000 nM
1 activity record(s) imported
InChIKey
CEFKIZQFNBRNTM-UHFFFAOYSA-N
SMILES
Cc1cnc(-n2ncc(C(=O)N3CCN(C(C)C)CC3)c2C2CC2)nc1-c1cccs1
Aliases
BDBM519281 (preferred) 2-{5-cyclopropyl-4-[(4-isopropyl-1-piperazinyl)carbonyl]-1H-pyrazol-1-yl}-5-methyl-4-(2-thienyl)pyrimidine (source_name) BDBM519281 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM519281 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM519281 Open - 10.7270/Q2736V2B
PubChem CID42481844 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cnc(-n2ncc(C(=O)N3CCN(C(C)C)CC3)c2C2CC2)nc1-c1cccs1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022139/BDB022139.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022139/BDB022139.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022139/BDB022139.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022139/BDB022139.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022139/BDB022139.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM519281 IC50 >67568 nM Low DOI: 10.7270/Q2736V2B 1