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US11161839, Example 3a

E3L022208
Internal ID: BDB022208
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB022208/BDB022208.sdf
Basic Properties
Compound ID
E3L022208
Internal ID
BDB022208
Molecular formula
C24H23ClN8O2
Molecular weight
490.955000
Exact mass
490.163250
XLogP
3.0525
TPSA
129.6600
HBA / HBD
7 / 3
Rotatable bonds
7
Heavy atoms / rings
35 / 4
Activity summary
IC50 unknown 89.00000000 nM
2 activity record(s) imported
InChIKey
OMXNCIYGLQZOHU-UHFFFAOYSA-N
SMILES
CC(Nc1cc(=O)n(C)c2ccc(Nc3ccnc(Cl)c3C#N)cc12)C(=O)NCc1cnn(C)c1
Aliases
BDBM522205 (preferred) US11161839, Example 3a (source_name) BDBM522205 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM522205 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM522205 Open - 10.7270/Q2320024
PubChem CID135385965 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(Nc1cc(=O)n(C)c2ccc(Nc3ccnc(Cl)c3C#N)cc12)C(=O)NCc1cnn(C)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022208/BDB022208.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022208/BDB022208.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022208/BDB022208.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022208/BDB022208.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022208/BDB022208.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM522205 IC50 117 nM Moderate DOI: 10.7270/Q2320024 1
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM522205 IC50 89 nM High DOI: 10.7270/Q2320024 1