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US11161839, Example 16c

E3L022344
Internal ID: BDB022344
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB022344/BDB022344.sdf
Basic Properties
Compound ID
E3L022344
Internal ID
BDB022344
Molecular formula
C30H36ClN9O2
Molecular weight
590.132000
Exact mass
589.268049
XLogP
4.4757
TPSA
121.1700
HBA / HBD
9 / 2
Rotatable bonds
7
Heavy atoms / rings
42 / 5
Activity summary
IC50 unknown 437.00000000 nM
1 activity record(s) imported
InChIKey
OKXPMIKPZPJGLL-UHFFFAOYSA-N
SMILES
Cc1nc(N2CCC(C(=O)N(C)C)CC2)nc(Nc2ccc3c(c2)c(NC(C)(C)c2ncccn2)cc(=O)n3C)c1Cl
Aliases
BDBM522341 (preferred) US11161839, Example 16c (source_name) BDBM522341 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein
reported_binder bindingdb_reported Yes No low BindingDB:BDBM522341 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM522341 Open - 10.7270/Q2320024
PubChem CID135385803 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc(N2CCC(C(=O)N(C)C)CC2)nc(Nc2ccc3c(c2)c(NC(C)(C)c2ncccn2)cc(=O)n3C)c1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022344/BDB022344.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022344/BDB022344.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022344/BDB022344.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022344/BDB022344.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022344/BDB022344.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component
BindingDB:BDBM522341 IC50 437 nM Moderate DOI: 10.7270/Q2320024 1