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US11161839, Example 16d

E3L022345
Internal ID: BDB022345
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB022345/BDB022345.sdf
Basic Properties
Compound ID
E3L022345
Internal ID
BDB022345
Molecular formula
C27H36ClN7O3
Molecular weight
542.084000
Exact mass
541.256816
XLogP
3.8670
TPSA
104.6200
HBA / HBD
8 / 2
Rotatable bonds
8
Heavy atoms / rings
38 / 4
Activity summary
IC50 unknown 562.00000000 nM
1 activity record(s) imported
InChIKey
GDDSLVZHOFPUNT-UHFFFAOYSA-N
SMILES
COCC(C)(C)Nc1cc(=O)n(C)c2ccc(Nc3nc(N4CCC(C(=O)N(C)C)CC4)ncc3Cl)cc12
Aliases
BDBM522342 (preferred) US11161839, Example 16d (source_name) BDBM522342 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein
reported_binder bindingdb_reported Yes No low BindingDB:BDBM522342 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM522342 Open - 10.7270/Q2320024
PubChem CID135387050 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COCC(C)(C)Nc1cc(=O)n(C)c2ccc(Nc3nc(N4CCC(C(=O)N(C)C)CC4)ncc3Cl)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022345/BDB022345.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022345/BDB022345.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022345/BDB022345.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022345/BDB022345.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022345/BDB022345.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component
BindingDB:BDBM522342 IC50 562 nM Moderate DOI: 10.7270/Q2320024 1