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US11174250, Example 19

E3L022504
Internal ID: BDB022504
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB022504/BDB022504.sdf
Basic Properties
Compound ID
E3L022504
Internal ID
BDB022504
Molecular formula
C30H34F2N4O3
Molecular weight
536.623000
Exact mass
536.259897
XLogP
5.2055
TPSA
66.9300
HBA / HBD
6 / 1
Rotatable bonds
6
Heavy atoms / rings
39 / 5
Activity summary
Kd unknown 71.00000000 nM
1 activity record(s) imported
InChIKey
SELRACPBIBUEEF-UHFFFAOYSA-N
SMILES
Cc1cc(C(=O)Nc2cc(-c3ccc(OC4CCOCC4)nc3F)ccc2N2CCN(C)CC2)cc(C)c1F
Aliases
BDBM525601 (preferred) US11174250, Example 19 (source_name) BDBM525601 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM525601 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM525601 Open - 10.7270/Q2C53Q0K
PubChem CID137376265 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(C(=O)Nc2cc(-c3ccc(OC4CCOCC4)nc3F)ccc2N2CCN(C)CC2)cc(C)c1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022504/BDB022504.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022504/BDB022504.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022504/BDB022504.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022504/BDB022504.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022504/BDB022504.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM525601 Kd 71 nM High DOI: 10.7270/Q2C53Q0K 1