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US11174250, Example 24

E3L022509
Internal ID: BDB022509
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB022509/BDB022509.sdf
Basic Properties
Compound ID
E3L022509
Internal ID
BDB022509
Molecular formula
C30H35FN4O2
Molecular weight
502.634000
Exact mass
502.274405
XLogP
4.6374
TPSA
48.0500
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
37 / 5
Activity summary
Kd unknown 5030.00000000 nM
1 activity record(s) imported
InChIKey
XZDAYUHSZSKJGF-UHFFFAOYSA-N
SMILES
Cc1cccc(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CCN(C)CC2)c1
Aliases
BDBM525606 (preferred) US11174250, Example 24 (source_name) BDBM525606 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM525606 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM525606 Open - 10.7270/Q2C53Q0K
PubChem CID138558045 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cccc(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CCN(C)CC2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022509/BDB022509.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022509/BDB022509.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022509/BDB022509.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022509/BDB022509.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022509/BDB022509.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM525606 Kd 5030 nM Low DOI: 10.7270/Q2C53Q0K 1