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US11174250, Example 108

E3L022589
Internal ID: BDB022589
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB022589/BDB022589.sdf
Basic Properties
Compound ID
E3L022589
Internal ID
BDB022589
Molecular formula
C30H34F4N6O2
Molecular weight
586.634000
Exact mass
586.267937
XLogP
4.7845
TPSA
72.9700
HBA / HBD
7 / 2
Rotatable bonds
7
Heavy atoms / rings
42 / 5
Activity summary
Kd > 200.00000000 nM
1 activity record(s) imported
InChIKey
AKPOZBSWTYUTFS-UHFFFAOYSA-N
SMILES
CNc1cc(C(F)(F)F)c(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CCN(C)CC2)cn1
Aliases
BDBM525690 (preferred) US11174250, Example 108 (source_name) BDBM525690 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM525690 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM525690 Open - 10.7270/Q2C53Q0K
PubChem CID137377548 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNc1cc(C(F)(F)F)c(C(=O)Nc2cc(-c3cc(CN4CCOCC4)ccc3F)ccc2N2CCN(C)CC2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022589/BDB022589.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022589/BDB022589.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022589/BDB022589.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022589/BDB022589.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022589/BDB022589.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM525690 Kd >200 nM Uncertain DOI: 10.7270/Q2C53Q0K 1