< Back to small molecule database

BDBM526605

E3L022678
Internal ID: BDB022678
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB022678/BDB022678.sdf
Basic Properties
Compound ID
E3L022678
Internal ID
BDB022678
Molecular formula
C30H41N9O3
Molecular weight
575.718000
Exact mass
575.333236
XLogP
3.1079
TPSA
129.0200
HBA / HBD
9 / 3
Rotatable bonds
11
Heavy atoms / rings
42 / 5
Activity summary
IC50 > 1000.00000000 nM
1 activity record(s) imported
InChIKey
YQHICWQULKSENB-RMKNXTFCSA-N
SMILES
CC(C)c1cnn2c(NCc3cccc(NC(=O)C4CCN4C/C=C/C(=O)N(C)C)c3)nc(NC3CCOCC3)nc12
Aliases
BDBM526605 (preferred) BDBM526605 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM526605 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM526605 Open - 10.7270/Q2Z03CCX
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)c1cnn2c(NCc3cccc(NC(=O)C4CCN4C/C=C/C(=O)N(C)C)c3)nc(NC3CCOCC3)nc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022678/BDB022678.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022678/BDB022678.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022678/BDB022678.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022678/BDB022678.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022678/BDB022678.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component
BindingDB:BDBM526605 IC50 >1000 nM Moderate DOI: 10.7270/Q2Z03CCX 1