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BDBM530330

E3L022924
Internal ID: BDB022924
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB022924/BDB022924.sdf
Basic Properties
Compound ID
E3L022924
Internal ID
BDB022924
Molecular formula
C25H39N5O3
Molecular weight
457.619000
Exact mass
457.305290
XLogP
2.3352
TPSA
79.8200
HBA / HBD
7 / 1
Rotatable bonds
4
Heavy atoms / rings
33 / 5
Activity summary
IC50 unknown 120.00000000 nM
1 activity record(s) imported
InChIKey
CNWAAMSHAIHACL-VOQZNFBZSA-N
SMILES
C[C@@H]1Cc2cnc(NC3CCOCC3)nc2CN1C(=O)[C@H]1CCN(C)C[C@@H]1C1CCOCC1
Aliases
BDBM530330 (preferred) [(6R)-6-methyl-2-(oxan-4-ylamino)-6,8-dihydro-5H-pyrido[3,4-d]pyrimidin-7-yl]-[(3R,4S)-1-methyl-3-(oxan-4-yl)piperidin-4-yl]methanone (source_name) BDBM530330 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM530330 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM530330 Open - 10.7270/Q2MC936B
PubChem CID163200264 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1Cc2cnc(NC3CCOCC3)nc2CN1C(=O)[C@H]1CCN(C)C[C@@H]1C1CCOCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022924/BDB022924.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022924/BDB022924.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022924/BDB022924.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022924/BDB022924.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022924/BDB022924.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component 		BindingDB:BDBM530330 IC50 120 nM Moderate DOI: 10.7270/Q2MC936B 1