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BDBM530333

E3L022927
Internal ID: BDB022927
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB022927/BDB022927.sdf
Basic Properties
Compound ID
E3L022927
Internal ID
BDB022927
Molecular formula
C27H37N5O2
Molecular weight
463.626000
Exact mass
463.294725
XLogP
3.3846
TPSA
70.5900
HBA / HBD
6 / 1
Rotatable bonds
4
Heavy atoms / rings
34 / 5
Activity summary
IC50 unknown 12.00000000 nM
1 activity record(s) imported
InChIKey
DKTUJTJSJRBONN-VEXUSMLFSA-N
SMILES
Cc1ccc([C@H]2CN(C)CC[C@@H]2C(=O)N2Cc3nc(NC4CCOCC4)ncc3C[C@H]2C)cc1
Aliases
BDBM530333 (preferred) [(3S,4S)-1-methyl-3-(4-methylphenyl)piperidin-4-yl]-[(6R)-6-methyl-2-(oxan-4-ylamino)-6,8-dihydro-5H-pyrido[3,4-d]pyrimidin-7-yl]methanone (source_name) BDBM530333 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM530333 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM530333 Open - 10.7270/Q2MC936B
PubChem CID163200267 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc([C@H]2CN(C)CC[C@@H]2C(=O)N2Cc3nc(NC4CCOCC4)ncc3C[C@H]2C)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB022927/BDB022927.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB022927/BDB022927.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB022927/BDB022927.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB022927/BDB022927.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB022927/BDB022927.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component 		BindingDB:BDBM530333 IC50 12 nM High DOI: 10.7270/Q2MC936B 1