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BDBM530419

E3L023008
Internal ID: BDB023008
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB023008/BDB023008.sdf
Basic Properties
Compound ID
E3L023008
Internal ID
BDB023008
Molecular formula
C26H32N6O
Molecular weight
444.583000
Exact mass
444.263760
XLogP
3.5674
TPSA
66.2900
HBA / HBD
5 / 1
Rotatable bonds
4
Heavy atoms / rings
33 / 5
Activity summary
IC50 unknown 9.12000000 nM
2 activity record(s) imported
InChIKey
ZSPKGLQDWCDKNG-GKVQRAMASA-N
SMILES
C[C@H]1Cc2cnc(Nc3cnn(C)c3)cc2CN1C(=O)[C@H]1CCN(C)C[C@@H]1c1ccccc1
Aliases
BDBM530419 (preferred) [(3S)-3-methyl-7-[(1-methylpyrazol-4-yl)amino]-3,4-dihydro-1H-2,6-naphthyridin-2-yl]-[(3S,4S)-1-methyl-3-phenylpiperidin-4-yl]methanone (source_name) BDBM530419 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM530419 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM530419 Open - 10.7270/Q2MC936B
PubChem CID163200348 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1Cc2cnc(Nc3cnn(C)c3)cc2CN1C(=O)[C@H]1CCN(C)C[C@@H]1c1ccccc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB023008/BDB023008.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB023008/BDB023008.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB023008/BDB023008.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB023008/BDB023008.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB023008/BDB023008.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component 		BindingDB:BDBM530419 IC50 23 nM High DOI: 10.7270/Q2MC936B 1
Cyclin-H
P51948
E3 ligase component 		BindingDB:BDBM530419 IC50 9.12 nM Very high DOI: 10.7270/Q2MC936B 1