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BDBM533414

E3L023042
Internal ID: BDB023042
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB023042/BDB023042.sdf
Basic Properties
Compound ID
E3L023042
Internal ID
BDB023042
Molecular formula
C17H16Cl2N4O5
Molecular weight
427.244000
Exact mass
426.049775
XLogP
1.3139
TPSA
136.1200
HBA / HBD
7 / 5
Rotatable bonds
3
Heavy atoms / rings
28 / 4
Activity summary
IC50 unknown 0.40000000 nM
1 activity record(s) imported
InChIKey
WSUFOFSXVANLHU-QFRSUPTLSA-N
SMILES
O/N=c1\nc[nH]c2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc(Cl)c(Cl)c2)[C@@H](O)[C@H]1O
Aliases
BDBM533414 (preferred) (2R,3S,4R,5R)-2-[(R)-(3,4-dichlorophenyl)-hydroxymethyl]-5-[4-(hydroxyamino)pyrrolo[2,3-d]pyrimidin-7-yl]oxolane-3,4-diol (source_name) BDBM533414 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM533414 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM533414 Open - 10.7270/Q25142D7
PubChem CID135307559 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O/N=c1\nc[nH]c2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc(Cl)c(Cl)c2)[C@@H](O)[C@H]1O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB023042/BDB023042.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB023042/BDB023042.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB023042/BDB023042.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB023042/BDB023042.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB023042/BDB023042.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM533414 IC50 0.4 nM Very high DOI: 10.7270/Q25142D7 1