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US11236047, Example 289

E3L023500
Internal ID: BDB023500
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB023500/BDB023500.sdf
Basic Properties
Compound ID
E3L023500
Internal ID
BDB023500
Molecular formula
C33H34ClFN4O4
Molecular weight
605.110000
Exact mass
604.225261
XLogP
4.5991
TPSA
118.7100
HBA / HBD
7 / 3
Rotatable bonds
9
Heavy atoms / rings
43 / 6
Activity summary
IC50 unknown 2.50000000 nM
4 activity record(s) imported
InChIKey
NFSWATKGUGXRKR-NFCCVXSLSA-N
SMILES
CC(O)(c1cc(F)c2c(c1)C(=O)N(Cc1ccc(C#N)cn1)[C@@]2(OCC1(CO)CC1)c1ccc(Cl)cc1)C1CCNCC1
Aliases
BDBM535341 (preferred) US11236047, Example 289 (source_name) BDBM535341 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM535341 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM535341 Open - 10.7270/Q2XD14WT; 10.7270/Q2FJ2MZX
PubChem CID135282279 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(O)(c1cc(F)c2c(c1)C(=O)N(Cc1ccc(C#N)cn1)[C@@]2(OCC1(CO)CC1)c1ccc(Cl)cc1)C1CCNCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB023500/BDB023500.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB023500/BDB023500.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB023500/BDB023500.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB023500/BDB023500.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB023500/BDB023500.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM535341 IC50 12 nM High DOI: 10.7270/Q2XD14WT 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM535341 IC50 2.5 nM Very high DOI: 10.7270/Q2FJ2MZX 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM535341 IC50 12 nM High DOI: 10.7270/Q2FJ2MZX 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM535341 IC50 2.5 nM Very high DOI: 10.7270/Q2XD14WT 1