E3Docker 2.0

US11242344, Example 127.2

E3L023698

Internal ID: BDB023698

Activity data available Local docking-ready structure

Structure

/e3_file/ligand_db/generated/BDB023698/BDB023698.sdf

Basic Properties

Compound ID

E3L023698

Internal ID

BDB023698

Molecular formula

C19H28N4O4

Molecular weight

376.457000

Exact mass

376.211055

XLogP

1.8880

TPSA

100.1900

HBA / HBD

7 / 2

Rotatable bonds

Heavy atoms / rings

27 / 4

Activity summary

Kd unknown 16400.00000000 nM
7 activity record(s) imported

InChIKey

AGJJNPYHMLNPDT-IJEWVQPXSA-N

SMILES

Cc1cc([C@H](C(=O)N2C[C@H](O)C[C@H]2C2=NOC3(CCCC3)N2)C(C)C)on1

Aliases

BDBM536209 (preferred) US11242344, Example 127.2 (source_name) BDBM536209 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P40337	VHL von Hippel-Lindau disease tumor suppressor	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM536209	medium ; target=von Hippel-Lindau disease tumor suppressor
Q15369	ELOC;TCEB1 Elongin-C	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM536209	medium ; target=von Hippel-Lindau disease tumor suppressor
Q15370	ELOB;TCEB2 Elongin-B	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM536209	medium ; target=von Hippel-Lindau disease tumor suppressor

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM536209	Open	-	10.7270/Q2KW5K7X
PubChem	CID157106624	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	Cc1cc([C@H](C(=O)N2C[C@H](O)C[C@H]2C2=NOC3(CCCC3)N2)C(C)C)on1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB023698/BDB023698.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB023698/BDB023698.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB023698/BDB023698.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB023698/BDB023698.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB023698/BDB023698.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
von Hippel-Lindau disease tumor suppressor Q15370 E3 ligase component	BindingDB:BDBM536209	IC50	50800 nM	Low	DOI: 10.7270/Q2KW5K7X	1
von Hippel-Lindau disease tumor suppressor Q15369 E3 ligase component	BindingDB:BDBM536209	IC50	50800 nM	Low	DOI: 10.7270/Q2KW5K7X	1
von Hippel-Lindau disease tumor suppressor P40337 E3 ligase component	BindingDB:BDBM536209	IC50	73200 nM	Low	DOI: 10.7270/Q2KW5K7X	1
von Hippel-Lindau disease tumor suppressor P40337 E3 ligase component	BindingDB:BDBM536209	IC50	50800 nM	Low	DOI: 10.7270/Q2KW5K7X	1
von Hippel-Lindau disease tumor suppressor P40337 E3 ligase component	BindingDB:BDBM536209	Kd	16400 nM	Low	DOI: 10.7270/Q2KW5K7X	1
von Hippel-Lindau disease tumor suppressor Q15370 E3 ligase component	BindingDB:BDBM536209	Kd	16400 nM	Low	DOI: 10.7270/Q2KW5K7X	1
von Hippel-Lindau disease tumor suppressor Q15369 E3 ligase component	BindingDB:BDBM536209	Kd	16400 nM	Low	DOI: 10.7270/Q2KW5K7X	1