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BDBM536467

E3L023801
Internal ID: BDB023801
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB023801/BDB023801.sdf
Basic Properties
Compound ID
E3L023801
Internal ID
BDB023801
Molecular formula
C32H34ClF3N8O6
Molecular weight
719.121000
Exact mass
718.224193
XLogP
1.8314
TPSA
192.0700
HBA / HBD
10 / 5
Rotatable bonds
10
Heavy atoms / rings
50 / 6
Activity summary
Kd unknown 3.13000000 nM
1 activity record(s) imported
InChIKey
PZFUGLFIDUSZRL-HNNXBMFYSA-N
SMILES
C[C@H]1CN(CC(CO)CO)CCN1c1cc(NC(=O)Cn2cc(-c3cc(C(N)=O)c(O)c(F)c3F)c3c(=O)n4c(nc32)CCC4)c(Cl)c(F)n1
Aliases
BDBM536467 (preferred) BDBM536467 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM536467 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM536467 Open - 10.7270/Q2Z60S71
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(CC(CO)CO)CCN1c1cc(NC(=O)Cn2cc(-c3cc(C(N)=O)c(O)c(F)c3F)c3c(=O)n4c(nc32)CCC4)c(Cl)c(F)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB023801/BDB023801.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB023801/BDB023801.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB023801/BDB023801.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB023801/BDB023801.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB023801/BDB023801.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM536467 Kd 3.13 nM Very high DOI: 10.7270/Q2Z60S71 1