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BDBM536505

E3L023839
Internal ID: BDB023839
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB023839/BDB023839.sdf
Basic Properties
Compound ID
E3L023839
Internal ID
BDB023839
Molecular formula
C30H30ClFN8O6
Molecular weight
653.071000
Exact mass
652.196087
XLogP
2.3109
TPSA
170.0700
HBA / HBD
10 / 3
Rotatable bonds
6
Heavy atoms / rings
46 / 7
Activity summary
Kd unknown 0.50000000 nM
3 activity record(s) imported
InChIKey
WXJSHBZZQMZOFB-AWEZNQCLSA-N
SMILES
C[C@H]1CN(C)CCN1c1cc(NC(=O)Cn2cc(-c3cc(C(N)=O)c(O)c4c3OCO4)c3c(=O)n4c(nc32)CCC4)c(Cl)c(F)n1
Aliases
BDBM536505 (preferred) BDBM536505 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM536505 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM536505 Open - 10.7270/Q2M049MH; 10.7270/Q2Z60S71 PMID: 36793435
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(C)CCN1c1cc(NC(=O)Cn2cc(-c3cc(C(N)=O)c(O)c4c3OCO4)c3c(=O)n4c(nc32)CCC4)c(Cl)c(F)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB023839/BDB023839.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB023839/BDB023839.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB023839/BDB023839.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB023839/BDB023839.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB023839/BDB023839.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM536505 Kd 0.5 nM Very high DOI: 10.7270/Q2M049MH
PMID: 36793435 		2 source records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM536505 Kd 0.53 nM Very high DOI: 10.7270/Q2Z60S71 1