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US11274098, Example 23

E3L024473
Internal ID: BDB024473
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB024473/BDB024473.sdf
Basic Properties
Compound ID
E3L024473
Internal ID
BDB024473
Molecular formula
C25H30N4O2
Molecular weight
418.541000
Exact mass
418.236876
XLogP
3.0860
TPSA
71.6000
HBA / HBD
3 / 3
Rotatable bonds
5
Heavy atoms / rings
31 / 5
Activity summary
IC50 unknown 75720.00000000 nM
1 activity record(s) imported
InChIKey
VXTOIHWDEBRQSW-UHFFFAOYSA-N
SMILES
O=C(NCC(O)CN1CCc2c([nH]c3ccccc23)C1)N1CCC(c2ccccc2)C1
Aliases
BDBM542509 (preferred) US11274098, Example 23 (source_name) BDBM542509 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM542509 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM542509 Open - 10.7270/Q2ZW1Q44
PubChem CID135331668 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(NCC(O)CN1CCc2c([nH]c3ccccc23)C1)N1CCC(c2ccccc2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB024473/BDB024473.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB024473/BDB024473.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB024473/BDB024473.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB024473/BDB024473.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB024473/BDB024473.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM542509 IC50 75720 nM Low DOI: 10.7270/Q2ZW1Q44 1