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US11292792, Cmpd # I-43

E3L025282
Internal ID: BDB025282
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB025282/BDB025282.sdf
Basic Properties
Compound ID
E3L025282
Internal ID
BDB025282
Molecular formula
C16H13N3O2
Molecular weight
279.299000
Exact mass
279.100777
XLogP
2.1672
TPSA
63.9900
HBA / HBD
3 / 1
Rotatable bonds
1
Heavy atoms / rings
21 / 4
Activity summary
IC50 unknown 65.00000000 nM
2 activity record(s) imported
InChIKey
CUVRZBKUGKVECT-UHFFFAOYSA-N
SMILES
O=C1CCC(n2c3ccccc3c3cnccc32)C(=O)N1
Aliases
BDBM547713 (preferred) US11292792, Cmpd # I-43 (source_name) BDBM547713 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM547713 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM547713 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM547713 Open - 10.7270/Q2GQ71ZT
PubChem CID153310518 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(n2c3ccccc3c3cnccc32)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025282/BDB025282.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025282/BDB025282.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025282/BDB025282.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025282/BDB025282.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025282/BDB025282.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM547713 IC50 65 nM High DOI: 10.7270/Q2GQ71ZT 2 source records