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US11292792, Cmpd # I-52

E3L025291
Internal ID: BDB025291
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB025291/BDB025291.sdf
Basic Properties
Compound ID
E3L025291
Internal ID
BDB025291
Molecular formula
C30H29N3O5
Molecular weight
511.578000
Exact mass
511.210721
XLogP
3.7687
TPSA
91.6800
HBA / HBD
6 / 1
Rotatable bonds
10
Heavy atoms / rings
38 / 5
Activity summary
IC50 < 10.00000000 nM
2 activity record(s) imported
InChIKey
MDZPNGRQUVITPA-UHFFFAOYSA-N
SMILES
O=C1CCC(n2c3cccc(C#CCOCCOCCOCc4ccccc4)c3c3cccnc32)C(=O)N1
Aliases
BDBM547722 (preferred) US11292792, Cmpd # I-52 (source_name) BDBM547722 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM547722 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM547722 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM547722 Open - 10.7270/Q2GQ71ZT
PubChem CID148465828 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(n2c3cccc(C#CCOCCOCCOCc4ccccc4)c3c3cccnc32)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025291/BDB025291.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025291/BDB025291.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025291/BDB025291.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025291/BDB025291.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025291/BDB025291.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM547722 IC50 <10 nM Very high DOI: 10.7270/Q2GQ71ZT 2 source records