< Back to small molecule database

US11292792, Cmpd # I-68

E3L025307
Internal ID: BDB025307
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB025307/BDB025307.sdf
Basic Properties
Compound ID
E3L025307
Internal ID
BDB025307
Molecular formula
C24H32N4O4
Molecular weight
440.544000
Exact mass
440.242356
XLogP
2.6217
TPSA
104.5300
HBA / HBD
5 / 2
Rotatable bonds
9
Heavy atoms / rings
32 / 4
Activity summary
IC50 unknown 65.00000000 nM
2 activity record(s) imported
InChIKey
VGIMJVRUHGWZHN-UHFFFAOYSA-N
SMILES
O=C1CCC(n2c3c(c4cccnc42)CN(C(=O)CCCCCCCCO)CC3)C(=O)N1
Aliases
BDBM547738 (preferred) US11292792, Cmpd # I-68 (source_name) BDBM547738 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM547738 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM547738 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM547738 Open - 10.7270/Q2GQ71ZT
PubChem CID153310469 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(n2c3c(c4cccnc42)CN(C(=O)CCCCCCCCO)CC3)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025307/BDB025307.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025307/BDB025307.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025307/BDB025307.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025307/BDB025307.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025307/BDB025307.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM547738 IC50 65 nM High DOI: 10.7270/Q2GQ71ZT 2 source records