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WO2022103411, Example S29

E3L025551
Internal ID: BDB025551
Activity data available Local docking-ready structure
Dock with P40337
Structure
/e3_file/ligand_db/generated/BDB025551/BDB025551.sdf
Basic Properties
Compound ID
E3L025551
Internal ID
BDB025551
Molecular formula
C28H36N6O3S
Molecular weight
536.702000
Exact mass
536.256960
XLogP
3.6269
TPSA
113.2400
HBA / HBD
7 / 2
Rotatable bonds
7
Heavy atoms / rings
38 / 5
Activity summary
IC50 unknown 10.00000000 nM
1 activity record(s) imported
InChIKey
JBTOFOFMEKQDIQ-ZFGGDYGUSA-N
SMILES
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](n2cc(C3(C)CC3)nn2)C(C)(C)C)cc1
Aliases
BDBM552711 (preferred) WO2022103411, Example S29 (source_name) BDBM552711 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM552711 medium
; target=von Hippel-Lindau disease tumor suppressor
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM552711 Open - 10.7270/Q2WM1HMJ
PubChem CID163300653 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](n2cc(C3(C)CC3)nn2)C(C)(C)C)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025551/BDB025551.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025551/BDB025551.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025551/BDB025551.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025551/BDB025551.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025551/BDB025551.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM552711 IC50 10 nM Very high DOI: 10.7270/Q2WM1HMJ 1