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WO2022104345, Example S14

E3L025586
Internal ID: BDB025586
Activity data available Local docking-ready structure
Dock with P40337
Structure
/e3_file/ligand_db/generated/BDB025586/BDB025586.sdf
Basic Properties
Compound ID
E3L025586
Internal ID
BDB025586
Molecular formula
C18H26F3N5O3
Molecular weight
417.432000
Exact mass
417.198774
XLogP
1.3830
TPSA
100.3500
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
29 / 3
Activity summary
IC50 unknown 6550.00000000 nM
1 activity record(s) imported
InChIKey
DDWPNWBJHOPRMC-KWCYVHTRSA-N
SMILES
CC(C)(C)[C@@H](C(=O)N1C[C@H](O)C[C@H]1C(=O)NCC(F)(F)F)n1cc(C2CC2)nn1
Aliases
BDBM552746 (preferred) WO2022104345, Example S14 (source_name) BDBM552746 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM552746 medium
; target=von Hippel-Lindau disease tumor suppressor
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM552746 Open - 10.7270/Q2RV0RX8
PubChem CID163303072 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C)[C@@H](C(=O)N1C[C@H](O)C[C@H]1C(=O)NCC(F)(F)F)n1cc(C2CC2)nn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025586/BDB025586.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025586/BDB025586.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025586/BDB025586.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025586/BDB025586.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025586/BDB025586.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM552746 IC50 6550 nM Low DOI: 10.7270/Q2RV0RX8 1