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US11319299, Example 137

E3L025751
Internal ID: BDB025751
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025751/BDB025751.sdf
Basic Properties
Compound ID
E3L025751
Internal ID
BDB025751
Molecular formula
C29H33FN8O3
Molecular weight
560.634000
Exact mass
560.265965
XLogP
3.1757
TPSA
119.7400
HBA / HBD
10 / 1
Rotatable bonds
6
Heavy atoms / rings
41 / 5
Activity summary
Kd unknown 20.00000000 nM
1 activity record(s) imported
InChIKey
VDIMFVDCAXCMDQ-KDURUIRLSA-N
SMILES
COc1cc(C#N)c(C(=O)Nc2cc(-c3cnc(N4CCOCC4)nc3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)cn1
Aliases
BDBM553088 (preferred) US11319299, Example 137 (source_name) BDBM553088 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553088 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553088 Open - 10.7270/Q27W6GD6
PubChem CID137377130 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(C#N)c(C(=O)Nc2cc(-c3cnc(N4CCOCC4)nc3)c(F)cc2N2C[C@@H](C)N(C)[C@@H](C)C2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025751/BDB025751.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025751/BDB025751.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025751/BDB025751.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025751/BDB025751.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025751/BDB025751.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553088 Kd 20 nM High DOI: 10.7270/Q27W6GD6 1