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US11319299, Example 177

E3L025791
Internal ID: BDB025791
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025791/BDB025791.sdf
Basic Properties
Compound ID
E3L025791
Internal ID
BDB025791
Molecular formula
C26H31FN6O2
Molecular weight
478.572000
Exact mass
478.249252
XLogP
3.4450
TPSA
76.7300
HBA / HBD
6 / 2
Rotatable bonds
6
Heavy atoms / rings
35 / 5
Activity summary
Kd > 200.00000000 nM
1 activity record(s) imported
InChIKey
JXVIFSMGTNIOGH-OAQYLSRUSA-N
SMILES
CN(C)[C@@H]1CCN(c2cc(F)c(-c3ccc(N4CCOCC4)cc3)cc2NC(=O)c2cn[nH]c2)C1
Aliases
BDBM553128 (preferred) US11319299, Example 177 (source_name) BDBM553128 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553128 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553128 Open - 10.7270/Q27W6GD6
PubChem CID137377510 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)[C@@H]1CCN(c2cc(F)c(-c3ccc(N4CCOCC4)cc3)cc2NC(=O)c2cn[nH]c2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025791/BDB025791.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025791/BDB025791.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025791/BDB025791.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025791/BDB025791.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025791/BDB025791.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553128 Kd >200 nM Uncertain DOI: 10.7270/Q27W6GD6 1