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US11319299, Example 185

E3L025799
Internal ID: BDB025799
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025799/BDB025799.sdf
Basic Properties
Compound ID
E3L025799
Internal ID
BDB025799
Molecular formula
C25H28F4N8O2
Molecular weight
548.545000
Exact mass
548.227135
XLogP
3.2538
TPSA
102.5100
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
39 / 5
Activity summary
Kd unknown 30.00000000 nM
1 activity record(s) imported
InChIKey
ZXJKKAHDLPKFFA-MRXNPFEDSA-N
SMILES
CN(C)[C@@H]1CCN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]nc2C(F)(F)F)C1
Aliases
BDBM553136 (preferred) US11319299, Example 185 (source_name) BDBM553136 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553136 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553136 Open - 10.7270/Q27W6GD6
PubChem CID138541771 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)[C@@H]1CCN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]nc2C(F)(F)F)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025799/BDB025799.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025799/BDB025799.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025799/BDB025799.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025799/BDB025799.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025799/BDB025799.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553136 Kd 30 nM High DOI: 10.7270/Q27W6GD6 1