< Back to small molecule database

BDBM553149

E3L025812
Internal ID: BDB025812
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025812/BDB025812.sdf
Basic Properties
Compound ID
E3L025812
Internal ID
BDB025812
Molecular formula
C28H29F4N5O3
Molecular weight
559.564000
Exact mass
559.220653
XLogP
4.7762
TPSA
90.5600
HBA / HBD
6 / 2
Rotatable bonds
7
Heavy atoms / rings
40 / 5
Activity summary
Kd unknown 0.66600000 nM
1 activity record(s) imported
InChIKey
SLBRGGBWEMXENK-INIZCTEOSA-N
SMILES
C[C@H]1CN(c2cc(F)c(-c3ccc(OCC4CC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
Aliases
BDBM553149 (preferred) N-[5-[6-(cyclopropylmethoxy)pyridin-3-yl]-2-[(3S)-3,4-dimethylpiperazin-1-yl]-4-fluorophenyl]-6-oxo-4-(trifluoromethyl)-1H-pyridine-3-carboxamide (source_name) BDBM553149 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553149 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553149 Open - 10.7270/Q27W6GD6
PubChem CID138551390 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(-c3ccc(OCC4CC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025812/BDB025812.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025812/BDB025812.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025812/BDB025812.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025812/BDB025812.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025812/BDB025812.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553149 Kd 0.666 nM Very high DOI: 10.7270/Q27W6GD6 1