< Back to small molecule database

US11319299, Example 218

E3L025832
Internal ID: BDB025832
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025832/BDB025832.sdf
Basic Properties
Compound ID
E3L025832
Internal ID
BDB025832
Molecular formula
C25H24F3N7O2
Molecular weight
511.508000
Exact mass
511.194358
XLogP
3.1833
TPSA
107.1500
HBA / HBD
7 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 4
Activity summary
Kd unknown 3.18000000 nM
1 activity record(s) imported
InChIKey
DJHAAPZISXGUQE-AWEZNQCLSA-N
SMILES
C[C@H]1CN(c2cc(F)c(-c3cnc(C#N)nc3)cc2NC(=O)c2cn(C)c(=O)cc2C(F)F)CCN1C
Aliases
BDBM553169 (preferred) US11319299, Example 218 (source_name) BDBM553169 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553169 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553169 Open - 10.7270/Q27W6GD6
PubChem CID138551570 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(-c3cnc(C#N)nc3)cc2NC(=O)c2cn(C)c(=O)cc2C(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025832/BDB025832.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025832/BDB025832.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025832/BDB025832.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025832/BDB025832.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025832/BDB025832.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553169 Kd 3.18 nM Very high DOI: 10.7270/Q27W6GD6 1