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BDBM553191

E3L025854
Internal ID: BDB025854
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025854/BDB025854.sdf
Basic Properties
Compound ID
E3L025854
Internal ID
BDB025854
Molecular formula
C26H25F4N5O4
Molecular weight
547.509000
Exact mass
547.184267
XLogP
3.7586
TPSA
99.7900
HBA / HBD
7 / 2
Rotatable bonds
4
Heavy atoms / rings
39 / 5
Activity summary
Kd unknown 2.82000000 nM
1 activity record(s) imported
InChIKey
TUBYFMDAMSFKHJ-AWEZNQCLSA-N
SMILES
C[C@H]1CN(c2cc(F)c(-c3cnc4c(c3)OCCO4)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C
Aliases
BDBM553191 (preferred) N-[5-(2,3-dihydro-[1,4]dioxino[2,3-b]pyridin-7-yl)-2-[(3S)-3,4-dimethylpiperazin-1-yl]-4-fluorophenyl]-6-oxo-4-(trifluoromethyl)-1H-pyridine-3-carboxamide (source_name) BDBM553191 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553191 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553191 Open - 10.7270/Q27W6GD6
PubChem CID138551530 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(-c3cnc4c(c3)OCCO4)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025854/BDB025854.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025854/BDB025854.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025854/BDB025854.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025854/BDB025854.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025854/BDB025854.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553191 Kd 2.82 nM Very high DOI: 10.7270/Q27W6GD6 1