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US11319299, Example 251

E3L025864
Internal ID: BDB025864
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025864/BDB025864.sdf
Basic Properties
Compound ID
E3L025864
Internal ID
BDB025864
Molecular formula
C29H31ClF2N4O2
Molecular weight
541.042000
Exact mass
540.210360
XLogP
6.2501
TPSA
57.7000
HBA / HBD
5 / 1
Rotatable bonds
7
Heavy atoms / rings
38 / 5
Activity summary
Kd unknown 16.00000000 nM
1 activity record(s) imported
InChIKey
MIMHFISDRAEPDG-HDICACEKSA-N
SMILES
C[C@@H]1CN(c2cc(F)c(-c3ccc(OCC4CC4)nc3)cc2NC(=O)c2ccc(F)cc2Cl)C[C@H](C)N1C
Aliases
BDBM553201 (preferred) US11319299, Example 251 (source_name) BDBM553201 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553201 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553201 Open - 10.7270/Q27W6GD6
PubChem CID137376846 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1CN(c2cc(F)c(-c3ccc(OCC4CC4)nc3)cc2NC(=O)c2ccc(F)cc2Cl)C[C@H](C)N1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025864/BDB025864.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025864/BDB025864.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025864/BDB025864.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025864/BDB025864.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025864/BDB025864.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553201 Kd 16 nM High DOI: 10.7270/Q27W6GD6 1