< Back to small molecule database

US11319299, Example 283

E3L025890
Internal ID: BDB025890
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025890/BDB025890.sdf
Basic Properties
Compound ID
E3L025890
Internal ID
BDB025890
Molecular formula
C26H30F4N8O2
Molecular weight
562.572000
Exact mass
562.242785
XLogP
3.2642
TPSA
91.6500
HBA / HBD
8 / 1
Rotatable bonds
6
Heavy atoms / rings
40 / 5
Activity summary
Kd unknown 15.00000000 nM
1 activity record(s) imported
InChIKey
PFYCWMDTXIYYTR-QGZVFWFLSA-N
SMILES
CN(C)[C@@H]1CCN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2cn(C)nc2C(F)(F)F)C1
Aliases
BDBM553227 (preferred) US11319299, Example 283 (source_name) BDBM553227 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553227 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553227 Open - 10.7270/Q27W6GD6
PubChem CID138541648 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)[C@@H]1CCN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2cn(C)nc2C(F)(F)F)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025890/BDB025890.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025890/BDB025890.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025890/BDB025890.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025890/BDB025890.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025890/BDB025890.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553227 Kd 15 nM High DOI: 10.7270/Q27W6GD6 1