< Back to small molecule database

US11319299, Example 301

E3L025906
Internal ID: BDB025906
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025906/BDB025906.sdf
Basic Properties
Compound ID
E3L025906
Internal ID
BDB025906
Molecular formula
C30H35F4N7O2
Molecular weight
601.649000
Exact mass
601.278836
XLogP
3.7496
TPSA
76.9500
HBA / HBD
7 / 1
Rotatable bonds
5
Heavy atoms / rings
43 / 5
Activity summary
Kd unknown 5.26000000 nM
1 activity record(s) imported
InChIKey
VWDUQBBEOGKQCJ-IBGZPJMESA-N
SMILES
C[C@H]1CN(c2cc(F)c(-c3ccc(N4CCN(C)CC4)nc3)cc2NC(=O)c2cn(C)c(=O)cc2C(F)(F)F)CCN1C
Aliases
BDBM553244 (preferred) US11319299, Example 301 (source_name) BDBM553244 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553244 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553244 Open - 10.7270/Q27W6GD6
PubChem CID138551445 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(-c3ccc(N4CCN(C)CC4)nc3)cc2NC(=O)c2cn(C)c(=O)cc2C(F)(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025906/BDB025906.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025906/BDB025906.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025906/BDB025906.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025906/BDB025906.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025906/BDB025906.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553244 Kd 5.26 nM Very high DOI: 10.7270/Q27W6GD6 1