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BDBM553248

E3L025910
Internal ID: BDB025910
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB025910/BDB025910.sdf
Basic Properties
Compound ID
E3L025910
Internal ID
BDB025910
Molecular formula
C32H36F4N8O5
Molecular weight
688.683000
Exact mass
688.274479
XLogP
3.2843
TPSA
155.0700
HBA / HBD
9 / 3
Rotatable bonds
8
Heavy atoms / rings
49 / 5
Activity summary
Kd unknown 0.78900000 nM
1 activity record(s) imported
InChIKey
BCDPUDFJPKUALQ-KDURUIRLSA-N
SMILES
C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCN(C(=O)CCC(=O)O)CC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C
Aliases
BDBM553248 (preferred) BDBM553248 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553248 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553248 Open - 10.7270/Q27W6GD6
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1CN(c2cc(F)c(-c3cnc(N4CCN(C(=O)CCC(=O)O)CC4)nc3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)C[C@H](C)N1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB025910/BDB025910.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB025910/BDB025910.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB025910/BDB025910.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB025910/BDB025910.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB025910/BDB025910.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553248 Kd 0.789 nM Very high DOI: 10.7270/Q27W6GD6 1