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BDBM553401

E3L026062
Internal ID: BDB026062
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026062/BDB026062.sdf
Basic Properties
Compound ID
E3L026062
Internal ID
BDB026062
Molecular formula
C30H33F4N7O3
Molecular weight
615.632000
Exact mass
615.258101
XLogP
3.9992
TPSA
106.6900
HBA / HBD
8 / 2
Rotatable bonds
7
Heavy atoms / rings
44 / 6
Activity summary
Kd unknown 9.71000000 nM
1 activity record(s) imported
InChIKey
JZLWCFLWIODPLY-HFJWLAOPSA-N
SMILES
CCCN1CC[C@H]2CN(c3cc(F)c(-c4cnc(N5CCOCC5)nc4)cc3NC(=O)c3c[nH]c(=O)cc3C(F)(F)F)C[C@H]21
Aliases
BDBM553401 (preferred) BDBM553401 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553401 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553401 Open - 10.7270/Q27W6GD6
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCN1CC[C@H]2CN(c3cc(F)c(-c4cnc(N5CCOCC5)nc4)cc3NC(=O)c3c[nH]c(=O)cc3C(F)(F)F)C[C@H]21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026062/BDB026062.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026062/BDB026062.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026062/BDB026062.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026062/BDB026062.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026062/BDB026062.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553401 Kd 9.71 nM Very high DOI: 10.7270/Q27W6GD6 1