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US11319299, Example 495

E3L026080
Internal ID: BDB026080
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026080/BDB026080.sdf
Basic Properties
Compound ID
E3L026080
Internal ID
BDB026080
Molecular formula
C27H29F4N7O3
Molecular weight
575.567000
Exact mass
575.226801
XLogP
3.2190
TPSA
106.6900
HBA / HBD
8 / 2
Rotatable bonds
5
Heavy atoms / rings
41 / 5
Activity summary
Kd unknown 25.00000000 nM
1 activity record(s) imported
InChIKey
CNOQTQYXABKNQN-INIZCTEOSA-N
SMILES
C[C@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)c(C(F)(F)F)c2)CCN1C
Aliases
BDBM553420 (preferred) US11319299, Example 495 (source_name) BDBM553420 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553420 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553420 Open - 10.7270/Q27W6GD6
PubChem CID138551576 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(-c3cnc(N4CCOCC4)nc3)cc2NC(=O)c2c[nH]c(=O)c(C(F)(F)F)c2)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026080/BDB026080.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026080/BDB026080.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026080/BDB026080.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026080/BDB026080.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026080/BDB026080.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553420 Kd 25 nM High DOI: 10.7270/Q27W6GD6 1