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US11319299, Example 530

E3L026113
Internal ID: BDB026113
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026113/BDB026113.sdf
Basic Properties
Compound ID
E3L026113
Internal ID
BDB026113
Molecular formula
C29H31F5N6O
Molecular weight
574.598000
Exact mass
574.247951
XLogP
4.8478
TPSA
63.7400
HBA / HBD
6 / 2
Rotatable bonds
5
Heavy atoms / rings
41 / 5
Activity summary
Kd unknown 2.16000000 nM
1 activity record(s) imported
InChIKey
DCMCFPHKSHIZQQ-SFHVURJKSA-N
SMILES
C[C@H]1CN(c2cc(F)c(-c3ccc(N4CCNCC4)nc3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)CCN1C
Aliases
BDBM553453 (preferred) US11319299, Example 530 (source_name) BDBM553453 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553453 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553453 Open - 10.7270/Q27W6GD6
PubChem CID138551583 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(-c3ccc(N4CCNCC4)nc3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026113/BDB026113.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026113/BDB026113.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026113/BDB026113.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026113/BDB026113.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026113/BDB026113.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553453 Kd 2.16 nM Very high DOI: 10.7270/Q27W6GD6 1