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US11319299, Example 555

E3L026138
Internal ID: BDB026138
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026138/BDB026138.sdf
Basic Properties
Compound ID
E3L026138
Internal ID
BDB026138
Molecular formula
C27H24F6N4O2
Molecular weight
550.503000
Exact mass
550.180345
XLogP
5.2812
TPSA
78.6700
HBA / HBD
4 / 2
Rotatable bonds
5
Heavy atoms / rings
39 / 4
Activity summary
Kd unknown 2.94000000 nM
1 activity record(s) imported
InChIKey
NGFYKPPLHCYJGM-AWEZNQCLSA-N
SMILES
C[C@H]1CN(c2cc(F)c(-c3ccc(C(N)=O)c(F)c3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)CCN1C
Aliases
BDBM553478 (preferred) US11319299, Example 555 (source_name) BDBM553478 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553478 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553478 Open - 10.7270/Q27W6GD6
PubChem CID138551487 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(-c3ccc(C(N)=O)c(F)c3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026138/BDB026138.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026138/BDB026138.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026138/BDB026138.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026138/BDB026138.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026138/BDB026138.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553478 Kd 2.94 nM Very high DOI: 10.7270/Q27W6GD6 1