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US11319299, Example 556

E3L026139
Internal ID: BDB026139
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026139/BDB026139.sdf
Basic Properties
Compound ID
E3L026139
Internal ID
BDB026139
Molecular formula
C28H26F6N4O2
Molecular weight
564.530000
Exact mass
564.195995
XLogP
5.6697
TPSA
78.6700
HBA / HBD
4 / 2
Rotatable bonds
5
Heavy atoms / rings
40 / 4
Activity summary
Kd unknown 10.00000000 nM
1 activity record(s) imported
InChIKey
CGGRRNPZYDEUQD-GASCZTMLSA-N
SMILES
C[C@@H]1CN(c2cc(F)c(-c3ccc(F)c(C(N)=O)c3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)C[C@H](C)N1C
Aliases
BDBM553479 (preferred) US11319299, Example 556 (source_name) BDBM553479 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553479 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553479 Open - 10.7270/Q27W6GD6
PubChem CID138541727 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1CN(c2cc(F)c(-c3ccc(F)c(C(N)=O)c3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)C[C@H](C)N1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026139/BDB026139.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026139/BDB026139.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026139/BDB026139.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026139/BDB026139.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026139/BDB026139.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553479 Kd 10 nM Very high DOI: 10.7270/Q27W6GD6 1