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BDBM553543

E3L026202
Internal ID: BDB026202
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026202/BDB026202.sdf
Basic Properties
Compound ID
E3L026202
Internal ID
BDB026202
Molecular formula
C28H33F3N6O3
Molecular weight
558.605000
Exact mass
558.256624
XLogP
3.7590
TPSA
91.9900
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
40 / 5
Activity summary
Kd unknown 2.22000000 nM
1 activity record(s) imported
InChIKey
AHMJFSLJDNGTLF-KRWDZBQOSA-N
SMILES
C[C@H]1CN(c2cc(F)c(C3=CCN(C(=O)N4CCCC4)C3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)F)CCN1C
Aliases
BDBM553543 (preferred) 4-(difluoromethyl)-N-[2-[(3S)-3,4-dimethylpiperazin-1-yl]-4-fluoro-5-[1-(pyrrolidine-1-carbonyl)-2,5-dihydropyrrol-3-yl]phenyl]-6-oxo-1H-pyridine-3-carboxamide (source_name) BDBM553543 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553543 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553543 Open - 10.7270/Q27W6GD6
PubChem CID138542278 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(C3=CCN(C(=O)N4CCCC4)C3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026202/BDB026202.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026202/BDB026202.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026202/BDB026202.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026202/BDB026202.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026202/BDB026202.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553543 Kd 2.22 nM Very high DOI: 10.7270/Q27W6GD6 1