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US11319299, Example 649

E3L026221
Internal ID: BDB026221
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026221/BDB026221.sdf
Basic Properties
Compound ID
E3L026221
Internal ID
BDB026221
Molecular formula
C29H29F5N6O
Molecular weight
572.582000
Exact mass
572.232301
XLogP
5.4599
TPSA
64.6000
HBA / HBD
6 / 1
Rotatable bonds
5
Heavy atoms / rings
41 / 5
Activity summary
Kd unknown 1.87000000 nM
1 activity record(s) imported
InChIKey
NDBMEBIYKBQTPR-SFHVURJKSA-N
SMILES
C[C@H]1CN(c2cc(F)c(C3=CCCN(c4ncccn4)C3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)CCN1C
Aliases
BDBM553563 (preferred) US11319299, Example 649 (source_name) BDBM553563 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553563 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553563 Open - 10.7270/Q27W6GD6
PubChem CID138551498 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CN(c2cc(F)c(C3=CCCN(c4ncccn4)C3)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)CCN1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026221/BDB026221.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026221/BDB026221.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026221/BDB026221.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026221/BDB026221.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026221/BDB026221.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553563 Kd 1.87 nM Very high DOI: 10.7270/Q27W6GD6 1