< Back to small molecule database

US11319299, Example 665

E3L026236
Internal ID: BDB026236
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026236/BDB026236.sdf
Basic Properties
Compound ID
E3L026236
Internal ID
BDB026236
Molecular formula
C36H41F7N4O2
Molecular weight
694.736000
Exact mass
694.311774
XLogP
8.6545
TPSA
64.6800
HBA / HBD
4 / 2
Rotatable bonds
7
Heavy atoms / rings
49 / 4
Activity summary
Kd unknown 151.00000000 nM
1 activity record(s) imported
InChIKey
LZCDZZIVYHQEBO-BGYRXZFFSA-N
SMILES
C[C@@H]1CN(c2cc(F)c(-c3ccc(C(=O)NC(C)(C)CC(C)(C)C)c(F)c3F)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)C[C@H](C)N1C
Aliases
BDBM553578 (preferred) US11319299, Example 665 (source_name) BDBM553578 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM553578 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553578 Open - 10.7270/Q27W6GD6
PubChem CID138541600 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1CN(c2cc(F)c(-c3ccc(C(=O)NC(C)(C)CC(C)(C)C)c(F)c3F)cc2NC(=O)c2ccc(F)cc2C(F)(F)F)C[C@H](C)N1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026236/BDB026236.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026236/BDB026236.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026236/BDB026236.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026236/BDB026236.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026236/BDB026236.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM553578 Kd 151 nM Moderate DOI: 10.7270/Q27W6GD6 1