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BDBM553659

E3L026316
Internal ID: BDB026316
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB026316/BDB026316.sdf
Basic Properties
Compound ID
E3L026316
Internal ID
BDB026316
Molecular formula
C35H41F4N5O3
Molecular weight
655.737000
Exact mass
655.314553
XLogP
6.7374
TPSA
97.5400
HBA / HBD
5 / 3
Rotatable bonds
7
Heavy atoms / rings
47 / 5
Activity summary
Kd unknown 4.85000000 nM
1 activity record(s) imported
InChIKey
VOWZATRVZCPEAH-NWIIZVJYSA-N
SMILES
C[C@@H]1CN(c2cc(F)c(-c3ccc(C(=O)NC4CCCCC4(C)C)c(F)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)F)C[C@H](C)N1C
Aliases
BDBM553659 (preferred) BDBM553659 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM553659 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM553659 Open - 10.7270/Q27W6GD6
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1CN(c2cc(F)c(-c3ccc(C(=O)NC4CCCCC4(C)C)c(F)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)F)C[C@H](C)N1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026316/BDB026316.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026316/BDB026316.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026316/BDB026316.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026316/BDB026316.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026316/BDB026316.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM553659 Kd 4.85 nM Very high DOI: 10.7270/Q27W6GD6 1