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US11365205, Example 25

E3L026439
Internal ID: BDB026439
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB026439/BDB026439.sdf
Basic Properties
Compound ID
E3L026439
Internal ID
BDB026439
Molecular formula
C21H25ClN4O2
Molecular weight
400.910000
Exact mass
400.166604
XLogP
2.3918
TPSA
59.9100
HBA / HBD
4 / 1
Rotatable bonds
6
Heavy atoms / rings
28 / 4
Activity summary
IC50 unknown 1950.00000000 nM
1 activity record(s) imported
InChIKey
MGEPDMOPTHUXNC-UHFFFAOYSA-N
SMILES
O=C1N(Cc2ccc(Cl)nc2)CCN1CC(O)CN1CCc2ccccc2C1
Aliases
BDBM558757 (preferred) US11365205, Example 25 (source_name) BDBM558757 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM558757 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM558757 Open - 10.7270/Q25M68WM
PubChem CID139513078 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1N(Cc2ccc(Cl)nc2)CCN1CC(O)CN1CCc2ccccc2C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026439/BDB026439.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026439/BDB026439.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026439/BDB026439.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026439/BDB026439.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026439/BDB026439.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM558757 IC50 1950 nM Low DOI: 10.7270/Q25M68WM 1