< Back to small molecule database

US11365205, Example 83

E3L026500
Internal ID: BDB026500
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB026500/BDB026500.sdf
Basic Properties
Compound ID
E3L026500
Internal ID
BDB026500
Molecular formula
C23H27N3O2
Molecular weight
377.488000
Exact mass
377.210327
XLogP
2.4257
TPSA
50.4000
HBA / HBD
3 / 1
Rotatable bonds
6
Heavy atoms / rings
28 / 4
Activity summary
IC50 unknown 500.00000000 nM
1 activity record(s) imported
InChIKey
VDPRTTASBRLXEJ-UHFFFAOYSA-N
SMILES
Cc1ccc(Cn2ccn(CC(O)CN3CCc4ccccc4C3)c2=O)cc1
Aliases
BDBM558818 (preferred) US11365205, Example 83 (source_name) BDBM558818 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM558818 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM558818 Open - 10.7270/Q25M68WM
PubChem CID139527211 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(Cn2ccn(CC(O)CN3CCc4ccccc4C3)c2=O)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026500/BDB026500.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026500/BDB026500.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026500/BDB026500.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026500/BDB026500.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026500/BDB026500.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM558818 IC50 500 nM Moderate DOI: 10.7270/Q25M68WM 1