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BDBM562097

E3L026648
Internal ID: BDB026648
Activity data available Local docking-ready structure
Dock with O60260
Structure
/e3_file/ligand_db/generated/BDB026648/BDB026648.sdf
Basic Properties
Compound ID
E3L026648
Internal ID
BDB026648
Molecular formula
C21H28N4
Molecular weight
336.483000
Exact mass
336.231397
XLogP
3.3761
TPSA
32.2600
HBA / HBD
4 / 0
Rotatable bonds
3
Heavy atoms / rings
25 / 4
Activity summary
EC50 unknown 990.00000000 nM
1 activity record(s) imported
InChIKey
DUPFHSJLAVGWMQ-UHFFFAOYSA-N
SMILES
Cc1nc2c(c(N3CCCN(Cc4ccccc4)CC3)n1)CCCC2
Aliases
BDBM562097 (preferred) 4-(4-Benzyl-1,4-diazepan-1-yl)-2-methyl-5,6,7,8-tetrahydroquinazoline (source_name) BDBM562097 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O60260 PRKN;PARK2
E3 ubiquitin-protein ligase parkin		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM562097 medium
; target=E3 ubiquitin-protein ligase parkin
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562097 Open - 10.7270/Q2B27ZHC
PubChem CID71858582 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc2c(c(N3CCCN(Cc4ccccc4)CC3)n1)CCCC2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026648/BDB026648.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026648/BDB026648.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026648/BDB026648.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026648/BDB026648.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026648/BDB026648.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase parkin
O60260
E3 ligase component 		BindingDB:BDBM562097 EC50 990 nM Moderate DOI: 10.7270/Q2B27ZHC 1