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US11401256, Example 2

E3L026659
Internal ID: BDB026659
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB026659/BDB026659.sdf
Basic Properties
Compound ID
E3L026659
Internal ID
BDB026659
Molecular formula
C31H25N7O2
Molecular weight
527.588000
Exact mass
527.206973
XLogP
4.8855
TPSA
106.7300
HBA / HBD
5 / 2
Rotatable bonds
4
Heavy atoms / rings
40 / 7
Activity summary
Kd unknown 40.00000000 nM
1 activity record(s) imported
InChIKey
QXGJZPQVKZRAFS-UHFFFAOYSA-N
SMILES
CNC(=O)c1ccc2c(c1)nc(-c1cc(-c3cncn3C)nc3ccccc13)n2-c1ccc2c(c1)CCC(=O)N2
Aliases
BDBM562109 (preferred) US11401256, Example 2 (source_name) BDBM562109 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM562109 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562109 Open - 10.7270/Q26976S1
PubChem CID137530761 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC(=O)c1ccc2c(c1)nc(-c1cc(-c3cncn3C)nc3ccccc13)n2-c1ccc2c(c1)CCC(=O)N2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026659/BDB026659.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026659/BDB026659.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026659/BDB026659.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026659/BDB026659.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026659/BDB026659.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM562109 Kd 40 nM High DOI: 10.7270/Q26976S1 1