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US11401256, Example 27

E3L026684
Internal ID: BDB026684
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB026684/BDB026684.sdf
Basic Properties
Compound ID
E3L026684
Internal ID
BDB026684
Molecular formula
C19H17N3O2
Molecular weight
319.364000
Exact mass
319.132077
XLogP
3.4326
TPSA
56.1500
HBA / HBD
3 / 1
Rotatable bonds
3
Heavy atoms / rings
24 / 4
Activity summary
Kd unknown 22.00000000 nM
1 activity record(s) imported
InChIKey
KXLKEXQAWGXNFQ-UHFFFAOYSA-N
SMILES
COc1ccc(-c2cncn2-c2ccc3c(c2)CCC(=O)N3)cc1
Aliases
BDBM562134 (preferred) US11401256, Example 27 (source_name) BDBM562134 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM562134 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562134 Open - 10.7270/Q26976S1
PubChem CID137526739 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc(-c2cncn2-c2ccc3c(c2)CCC(=O)N3)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026684/BDB026684.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026684/BDB026684.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026684/BDB026684.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026684/BDB026684.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026684/BDB026684.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM562134 Kd 22 nM High DOI: 10.7270/Q26976S1 1