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US11401256, Example 43

E3L026699
Internal ID: BDB026699
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB026699/BDB026699.sdf
Basic Properties
Compound ID
E3L026699
Internal ID
BDB026699
Molecular formula
C23H20N6O2
Molecular weight
412.453000
Exact mass
412.164774
XLogP
2.9140
TPSA
114.9300
HBA / HBD
5 / 3
Rotatable bonds
3
Heavy atoms / rings
31 / 5
Activity summary
Kd unknown 31.00000000 nM
1 activity record(s) imported
InChIKey
KJHUEMGKNAKECZ-UHFFFAOYSA-N
SMILES
CNC(=O)c1ccc2c(c1)nc(-c1ncccc1N)n2-c1ccc2c(c1)CCC(=O)N2
Aliases
BDBM562150 (preferred) US11401256, Example 43 (source_name) BDBM562150 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM562150 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562150 Open - 10.7270/Q26976S1
PubChem CID137526391 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC(=O)c1ccc2c(c1)nc(-c1ncccc1N)n2-c1ccc2c(c1)CCC(=O)N2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026699/BDB026699.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026699/BDB026699.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026699/BDB026699.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026699/BDB026699.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026699/BDB026699.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM562150 Kd 31 nM High DOI: 10.7270/Q26976S1 1