< Back to small molecule database

US11401256, Example 48

E3L026704
Internal ID: BDB026704
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB026704/BDB026704.sdf
Basic Properties
Compound ID
E3L026704
Internal ID
BDB026704
Molecular formula
C25H21N5O3
Molecular weight
439.475000
Exact mass
439.164440
XLogP
3.5344
TPSA
105.9800
HBA / HBD
5 / 2
Rotatable bonds
4
Heavy atoms / rings
33 / 5
Activity summary
Kd unknown 4.00000000 nM
1 activity record(s) imported
InChIKey
CPIOFCOLTFRAOD-UHFFFAOYSA-N
SMILES
CNC(=O)c1ccc2c(c1)nc(-c1cccnc1C(C)=O)n2-c1ccc2c(c1)CCC(=O)N2
Aliases
BDBM562156 (preferred) US11401256, Example 48 (source_name) BDBM562156 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM562156 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562156 Open - 10.7270/Q26976S1
PubChem CID137525862 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC(=O)c1ccc2c(c1)nc(-c1cccnc1C(C)=O)n2-c1ccc2c(c1)CCC(=O)N2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026704/BDB026704.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026704/BDB026704.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026704/BDB026704.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026704/BDB026704.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026704/BDB026704.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM562156 Kd 4 nM Very high DOI: 10.7270/Q26976S1 1