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US11401256, Example 51

E3L026707
Internal ID: BDB026707
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB026707/BDB026707.sdf
Basic Properties
Compound ID
E3L026707
Internal ID
BDB026707
Molecular formula
C20H21N5O2
Molecular weight
363.421000
Exact mass
363.169525
XLogP
2.7882
TPSA
88.9100
HBA / HBD
4 / 2
Rotatable bonds
3
Heavy atoms / rings
27 / 4
Activity summary
Kd unknown 11.00000000 nM
1 activity record(s) imported
InChIKey
DENFGDXFDDVFQQ-UHFFFAOYSA-N
SMILES
CNC(=O)c1ccc2c(c1)nc(C(C)C)n2-c1ccc2c(n1)CCC(=O)N2
Aliases
BDBM562159 (preferred) US11401256, Example 51 (source_name) BDBM562159 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM562159 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562159 Open - 10.7270/Q26976S1
PubChem CID137526230 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC(=O)c1ccc2c(c1)nc(C(C)C)n2-c1ccc2c(n1)CCC(=O)N2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026707/BDB026707.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026707/BDB026707.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026707/BDB026707.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026707/BDB026707.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026707/BDB026707.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM562159 Kd 11 nM High DOI: 10.7270/Q26976S1 1