< Back to small molecule database

US11401256, Example 56

E3L026712
Internal ID: BDB026712
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB026712/BDB026712.sdf
Basic Properties
Compound ID
E3L026712
Internal ID
BDB026712
Molecular formula
C19H18N2O2
Molecular weight
306.365000
Exact mass
306.136828
XLogP
3.1643
TPSA
49.4100
HBA / HBD
2 / 1
Rotatable bonds
1
Heavy atoms / rings
23 / 4
Activity summary
Kd unknown 5.00000000 nM
1 activity record(s) imported
InChIKey
HYKPFXYXAGCQSS-UHFFFAOYSA-N
SMILES
O=C1CCc2cc(C(=O)N3CCCc4ccccc43)ccc2N1
Aliases
BDBM562164 (preferred) US11401256, Example 56 (source_name) BDBM562164 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM562164 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562164 Open - 10.7270/Q26976S1
PubChem CID86911719 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCc2cc(C(=O)N3CCCc4ccccc43)ccc2N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026712/BDB026712.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026712/BDB026712.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026712/BDB026712.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026712/BDB026712.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026712/BDB026712.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM562164 Kd 5 nM Very high DOI: 10.7270/Q26976S1 1